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bed files
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0
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7
replies
2.2k
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Compute average score across multiple bed files
chip-seq
granges
R
bed files
updated 5.8 years ago by
spotifywebplayer
• 0 • written 5.8 years ago by
jinseok
• 0
0
votes
0
replies
993
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.4 years ago
linuxborg2
• 0
1
vote
1
reply
1.6k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
rbronste
▴ 60
0
votes
1
reply
1.1k
views
getReadCountsFromBAM including bed information
cn.mops
bed files
getReadCountsFromBAM
6.9 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
1
reply
1.0k
views
Bioconductor RNA-seq bed file read-in/download then wavelet transform
bed files
wavelet
rna-seq
updated 7.1 years ago by
shepherl
3.9k • written 7.1 years ago by
whgsnp
• 0
0
votes
1
reply
1.3k
views
How to extract non-overlapping genes from a a bed file?
gene density
bed files
gff
7.8 years ago
birdguy.saikat
• 0
2
votes
3
replies
2.4k
views
import.bed fails on bed file with no scores
rtracklayer
import
bed files
8.2 years ago • updated 8.1 years ago
jmr
• 0
0
votes
0
replies
1.0k
views
customproDB: gene fusions
fusion
bed files
gene fusion
bed file
8.2 years ago
ramaniak
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2
by
Ram
▴ 210
Cross-posted on biostars: https://www.biostars.org/p/9596031/
Comment: SpliceWiz collateData error
by
giulia.nicoletto.1
• 0
Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…
Answer: Best way to describe DEseq2 design
by
SamGG
▴ 350
Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …
Answer: Deseq2
by
ATpoint
★ 4.2k
Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…
Comment: Counter-directional LFC shrinkage
by
Michael Love
42k
Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…
Votes
Answer: Deseq2
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: When should I correct for batch effects
Answer: When should I correct for batch effects
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